ORGANIC | Code repo for optimizing distributions of molecules | Dataset library

 by   aspuru-guzik-group Jupyter Notebook Version: Current License: GPL-3.0

kandi X-RAY | ORGANIC Summary

kandi X-RAY | ORGANIC Summary

ORGANIC is a Jupyter Notebook library typically used in Artificial Intelligence, Dataset applications. ORGANIC has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

ORGANIC (Objective-Reinforced Generative Adversarial Network for Inverse-design Chemistry) is an efficient molecular generation tool, able to create molecules with desired properties. It has a user-oriented interface, and doesn't require a HPC cluster. Feel free to check our article about ORGANIC and/or contact the developers if you have any issue or are interested in collaborations. This implementation is authored by Carlos Outeiral (carlos@outeiral.net), Benjamin Sanchez-Lengeling (beangoben@gmail.com), Gabriel Guimaraes (gabrielguimaraes@college.harvard.edu) and Alan Aspuru-Guzik (alan@aspuru.com), affiliated to Harvard University, Department of Chemistry and Chemical Biology, at the time of release.
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              ORGANIC has a low active ecosystem.
              It has 103 star(s) with 57 fork(s). There are 11 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 10 open issues and 2 have been closed. On average issues are closed in 1 days. There are 1 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of ORGANIC is current.

            kandi-Quality Quality

              ORGANIC has no bugs reported.

            kandi-Security Security

              ORGANIC has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              ORGANIC is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              ORGANIC releases are not available. You will need to build from source code and install.
              Installation instructions are not available. Examples and code snippets are available.

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            ORGANIC Key Features

            No Key Features are available at this moment for ORGANIC.

            ORGANIC Examples and Code Snippets

            No Code Snippets are available at this moment for ORGANIC.

            Community Discussions

            QUESTION

            Stringdist distance unexpectedly large
            Asked 2022-Apr-14 at 14:02

            The following data has the surprising result that it does not match. I was expecting the distance to be 5, but even at 7 I get no match

            ...

            ANSWER

            Answered 2022-Apr-14 at 13:52

            The problem comes down to the method you are using to calculate the string distance. You are using the lcs (longest common substring) method, which in effect only allows deletions and insertions rather than substitutions. From the docs:

            The longest common substring (method='lcs') is defined as the longest string that can be obtained by pairing characters from a and b while keeping the order of characters intact. The lcs-distance is defined as the number of unpaired characters. The distance is equivalent to the edit distance allowing only deletions and insertions, each with weight one.

            So when we convert spaces to underscores, we incur a weighting of 2 per substitution:

            Source https://stackoverflow.com/questions/71872314

            QUESTION

            Unity 3'nd Person Controller Camera Acting Weird
            Asked 2022-Apr-08 at 23:22

            I'm very new in Unity and Stackowerflow. If i did something wrong, please don't judge me ^^ I used Unity's TPS Controller asset for my game. In first, it worked very well. But then It broke. But i didn't do anything :( (i don't even touch scripts or prefabs). After that, i deleted asset and re-download it but it didnt work again. Here is one example from my broken scene and these are the codes from my controller. Thanks For Any Kind of Help.

            Starter Assets Input ...

            ANSWER

            Answered 2022-Apr-08 at 23:22

            I had the same problem too. I researched a lot of documents about that and finally, I solved this problem. The problem is not about your codes or events or smth else. The problem is related to Unity. I don't know the exact reason for the problem but you can solve it this way: First, go Edit > Project Settings and select Input System Package from the Left tab. And then, change the Update Method with Process Events In Dynamic Update. And that's all! Dynamic update means the usual Update method that you see in the scripts void Update().

            Images

            Source https://stackoverflow.com/questions/71804001

            QUESTION

            API call (python) from twitter returns Unauthorized error but works on Postman
            Asked 2022-Mar-15 at 01:29

            I recently tried getting organic metrics for a tweet using postman. My trial on postman was successful, I used Oauth 1.0 for authorization. And from this example I extracted the python syntax for the API request.

            The following is the sample code:

            ...

            ANSWER

            Answered 2022-Mar-15 at 01:29

            To work with user context on twitter API use requests_oauthlib class. You can find a simple implementation below in python:

            Source https://stackoverflow.com/questions/71427724

            QUESTION

            How to display products from specific tag in shopify?
            Asked 2022-Mar-08 at 15:37

            How to display products from specific tag "organic" in shopify custom template? Here is my code.

            ...

            ANSWER

            Answered 2021-Aug-03 at 13:11

            it will help in displaying the specific product title , Please also check the API documentation here

            Source https://stackoverflow.com/questions/68633842

            QUESTION

            add suffix based on multiple conditions from string values in another column
            Asked 2022-Feb-28 at 14:26

            I would like to add a suffix to strings in one column when a condition is met in another column. If a value is present in "Market" column, "Symbol" column corresponding value is updated to include current ticker but I would like to add a suffix to it representing its market place. I guess I could create multiple masks and change multiple values with multiple lines of codes for each value but I was wondering if there exist a more elegant way of doing this in one operation.

            This is what I tried :

            conditions = [ (df['Market'].str.contains("Oslo")), (df['Market'].str.contains("Paris")), (df['Market'].str.contains("Amsterdam")), (df['Market'].str.contains("Brussels")), (df['Market'].str.contains("Dublin")) ] values = [str+'.OL', str+'.PA', str+'.AS', str+'.BR', str+'.IR'] df['Symbol'] = np.select(conditions, values) print(df)

            I get an error :

            unsupported operand type(s) for +: 'type' and 'str'

            any help welcome

            added after KingOtto's answer...

            the data frame :

            ...

            ANSWER

            Answered 2022-Feb-16 at 12:25

            You need to proceed in 3 steps

            1. You need to define an exhaustive suffix_list - a dictionary that holds information only once for each market

              suffix_list = pd.DataFrame({'Market': ['Oslo', 'Paris'], 'suffix':['OL','PA']})

            2. You want to merge the suffix_list into your existing dataframe as a new column - one command for all markets (for each market that has a suffix in the list, you add that suffix):

              pd.merge(df, suffix_list, how='left', on='Market')

            3. Now that you have the 2 columns 'value' and 'suffix' next to each other for all rows, you can apply 1 single operation for all rows

              str('value')+'suffix'

            Source https://stackoverflow.com/questions/71140439

            QUESTION

            How do I read data, with variable number of rows, into a set of records?
            Asked 2022-Feb-22 at 20:58

            I have a .csv file that I am reading with the csv package. The file has the following layout:

            ...

            ANSWER

            Answered 2022-Feb-22 at 20:58

            As was discussed in the comments, your soure file is not CSV. I see it more like a "label" where a record is some number of lines that has:

            • a clear start (Item number)
            • a clear end (first empty line after Item number)
            • data in between

            You need a little state machine: it's just a for-loop that reads every line and makes decisions, "this is the start of a record", "this is the end of a record", "this must be data inside a record".

            The following state machine makes use of the continue statement to short-circuit the loop and the decision-making process. This control structure allows the machine to avoid redundant logic, like "if I'm in a record and the line looks like a certain kind of data, then...".

            Instead, past a certain point in the for-loop, the machine knows it can only be in a record and the decisions that follow are purely about data, "this line looks like a certain kind of data and I'll act on it accordingly".

            The decision making process looks like the following, For every line:

            1. check if line is the start of the record; set state "in record", skip to next line

            2. or check if state is not "in record"; skip to next line

            3. or check if line is the end of the record; unset state "in record", do something useful with the accumulated record data, skip to next line

            4. or find 'Item definition' line; ignore it, skip to next line

            5. finally (logically), "in record" and the line is data you care about; parse it

            As you probably noticed, it has a strong bias towards skipping to the next line once it knows what kind of line it's on. This isn't a necessary feature of a state machine, but I like it because it avoids a lot of if-statements, and especially nesting or compounding of if-statements:

            Source https://stackoverflow.com/questions/71189565

            QUESTION

            How to implement hyperlinks in JSON & D3 plugin?
            Asked 2022-Feb-22 at 13:49

            My goal here is to have the childless nodes contain hyperlinks. This is the D3 plugin I'm basing things off of: https://github.com/deltoss/d3-mitch-tree Image Example

            I'm newer to JS and JSON so I'm having difficulties on figuring out how to proceed, especially since there's little to refer to in regard to hyperlinks & JSON. If there's a better way to go about this, I'm certainly open to new ideas.

            Thank you in advance

            ...

            ANSWER

            Answered 2021-Nov-22 at 09:06

            Chain this method before .initialize():

            Source https://stackoverflow.com/questions/70058590

            QUESTION

            Creating Chart.js using API data in react
            Asked 2021-Dec-13 at 06:07

            I am new to React, I dont really know how React hook works, here I encounter a problem. I tried to draw a chart using Chart.js and re draw it in specific interval using data from API, the problem is the chart does not read the data. This is the get data function:

            ...

            ANSWER

            Answered 2021-Dec-13 at 06:07

            Your html file in the part where you are going to draw the chart should look something like this:

            Source https://stackoverflow.com/questions/70330140

            QUESTION

            How to make pivot_wider (r) / pivot (pandas) in clickhouse by mutating part of the rows into columns?
            Asked 2021-Dec-07 at 19:36

            I have a table like:

            event_id date event_name key value 1 '2021-01-01' 'session_start' 'session_id' '12345' 1 '2021-01-01' 'session_start' 'network' 'organic' 1 '2021-01-01' 'session_start' 'screen_id' '22' 1 '2021-01-01' 'session_start' 'any_var' 'True' 2 '2021-01-02' 'app_deleted' 'session_id' '23456' 2 '2021-01-02' 'app_deleted' 'network' 'organic' 2 '2021-01-02' 'app_deleted' 'screen_id' '33'

            I would like to turn it into a table with more columns and reduce the number of rows, so that the 'key' values become columns, and 'value' - the values of these columns, setting NULL where the values will be empty. There will be ~ 100 columns in total.

            event_id date event_name session_id network screen_id any_var 1 '2021-01-01' 'session_start' '12345' 'organic' '22' 'True' 1 '2021-01-02' 'app_deleted' '23456' 'organic' '33' NULL

            Thanks!

            P.S. I can’t bring the solution with array to mind on my own

            P.P.S Unfortunately the keys can be different and they differ from month to month

            ...

            ANSWER

            Answered 2021-Dec-07 at 18:04
            SELECT
                event_id,
                date,
                event_name,
                anyIf(toNullable(value), key = 'session_id') AS session_id,
                anyIf(toNullable(value), key = 'network') AS network,
                anyIf(toNullable(value), key = 'screen_id') AS screen_id,
                anyIf(toNullable(value), key = 'any_var') AS any_var
            FROM b
            GROUP BY
                event_id,
                date,
                event_name;
            
            ┌─event_id─┬───────date─┬─event_name────┬─session_id─┬─network─┬─screen_id─┬─any_var─┐
            │        1 │ 2021-01-01 │ session_start │ 12345      │ organic │ 22        │ True    │
            │        2 │ 2021-01-02 │ app_deleted   │ 23456      │ organic │ 33        │ ᴺᵁᴸᴸ    │
            └──────────┴────────────┴───────────────┴────────────┴─────────┴───────────┴─────────┘
            
            
            create table b (event_id int, date date, event_name String, key String, value String) Engine=Memory;
            
            insert into b values
            (1 ,'2021-01-01','session_start','session_id','12345')
            (1,'2021-01-01','session_start','network','organic')
            (1,'2021-01-01','session_start','screen_id','22')
            (1,'2021-01-01','session_start','any_var','True')
            (2,'2021-01-02','app_deleted','session_id','23456')
            (2,'2021-01-02','app_deleted','network','organic')
            (2,'2021-01-02','app_deleted','screen_id','33')
            
            
            

            Source https://stackoverflow.com/questions/70257182

            QUESTION

            Remove duplicates based on multiple columns and datetime
            Asked 2021-Oct-31 at 21:58

            I want to remove duplicated rows that has same visitor_id based on the earlier datetime. For example, for visitor_id 2643331144, I want to pick row 1 as it has the earlier visit date time, and also keep channel and visit_page for the same row. And for visitor_id 1092581226, I want to keep row 3.

            rowno visitor_id datetime channel visit_page 1 2643331144 10/3/2021 4:05:29 PM email landing page 2 2643331144 10/3/2021 4:05:39 PM organic search landing page 3 1092581226 10/7/2021 1:08:12 PM email price reduced 4 1092581226 10/7/2021 1:08:44 PM organic search landing page 5 1092581226 10/7/2021 1:09:04 PM paid search unknow 6 1092581226 10/7/2021 1:09:05 PM email price reduced

            And I want a result look like below:

            rowno visitor_id datetime channel visit_page 1 2643331144 10/3/2021 4:05:29 PM email landing page 2 1092581226 10/7/2021 1:08:12 PM email price reduced

            I used below query but the total visitor number is over-deduped. But without using partition, total number will be double counted as same visitor has multiple channels and pages during same session.

            ...

            ANSWER

            Answered 2021-Oct-31 at 21:58

            If the only problem is rownum in final output you can "recount" it with row_number() over (order by datetime asc) as rownum in final select:

            Source https://stackoverflow.com/questions/69790669

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

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            You can download it from GitHub.

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